BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006E02LP1|AL425540
(287 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig224 390 e-109
3x_Contig419 352 2e-97
>3x_Contig224
Length = 2261
Score = 390 bits (196), Expect = e-109
Identities = 257/271 (94%), Gaps = 6/271 (2%)
Strand = Plus / Plus
Query: 11 taatttaacggacgccgagaaactggccattcttacagctaatgcgcctttgaaaagaac 70
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1597 taatttaacggacgccgagaaaatggccattcttacagctaatgcgcctttgaaaagaac 1656
Query: 71 tttgaaatcaagacatttgcagatga--ttgccatcggtggtgctattggtaccggtctt 128
|||||||||||||||||||||||||| |||||||||||||||||||| || | ||||
Sbjct: 1657 tttgaaatcaagacatttgcagatgaatatgccatcggtggtgctattgaaacagatctt 1716
Query: 129 ttcgttggttctggtaaggcattggctactgccggtcctgcaggtatct-tgatcggttg 187
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct: 1717 ttcgttggttctggtaaggaattggctactgccggtcctgcaggtatctatgataggttg 1776
Query: 188 ggctcttaccggtactatgatttactgtatggttatggccatgggt-gagttagctgtca 246
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1777 ggctcttaccggtactatgatttactgtatggttatggccatgggtggagttagctgtca 1836
Query: 247 ctttccctatacgactggtgggttcaccact 277
|||||||||| || |||||||||||||||||
Sbjct: 1837 ctttccctat-cg-ctggtgggttcaccact 1865
>3x_Contig419
Length = 1943
Score = 352 bits (177), Expect = 2e-97
Identities = 210/221 (95%)
Strand = Plus / Minus
Query: 34 tggccattcttacagctaatgcgcctttgaaaagaactttgaaatcaagacatttgcaga 93
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 1212 tggccattcttacagctaatgcccctttgaaaagaactttgaaatcaagacatttgcaaa 1153
Query: 94 tgattgccatcggtggtgctattggtaccggtcttttcgttggttctggtaaggcattgg 153
|||||| || |||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct: 1152 tgattggtataggtggtgccattggtaccggtcttttcgttggttctggtaagtccttgg 1093
Query: 154 ctactgccggtcctgcaggtatcttgatcggttgggctcttaccggtactatgatttact 213
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 ctactgctggtcctgcaggtatcttgatcggttgggctcttaccggtactatgatttact 1033
Query: 214 gtatggttatggccatgggtgagttagctgtcactttccct 254
||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1032 gtatggttatggccatgggtgagttagctgttaccttccct 992
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1730
Number of Sequences: 1807
Number of extensions: 1730
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 287
length of database: 10,358,551
effective HSP length: 16
effective length of query: 271
effective length of database: 10,329,639
effective search space: 2799332169
effective search space used: 2799332169
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 49 (98.1 bits)